PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039351
Common NameLOC102606272
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 345aa    MW: 39273.7 Da    PI: 9.6323
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039351genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-20105154154
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                           ++ykGVr+++ +g+W+AeIrd    n  ++r +lg+f+taeeAa a+++a+ +++
  PGSC0003DMP400039351 105 KKYKGVRQRR-WGKWAAEIRDtK--N--KTRLWLGTFDTAEEAALAYDKAAIEIR 154
                           59*****998.**********33..3..4**********************9987 PP

2AP261.61.8e-19261311256
                   AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           +y+GVr++k +g+W+AeIrd      k++r +lg+f+ta eAa a+++a+ +++g+
  PGSC0003DMP400039351 261 KYRGVRRRK-WGKWAAEIRDtR----KKTRLWLGTFDTALEAALAYDKAAIEIRGA 311
                           8*****998.**********33....36*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-27105154No hitNo description
SuperFamilySSF541716.54E-19106158IPR016177DNA-binding domain
PROSITE profilePS5103220.811106163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-26106156IPR001471AP2/ERF domain
SMARTSM003805.5E-29106171IPR001471AP2/ERF domain
PfamPF008472.3E-14106155IPR001471AP2/ERF domain
PRINTSPR003678.9E-11107118IPR001471AP2/ERF domain
PRINTSPR003678.9E-11129145IPR001471AP2/ERF domain
CDDcd000182.44E-29261316No hitNo description
SuperFamilySSF541712.62E-20261317IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-28261316IPR001471AP2/ERF domain
SMARTSM003809.8E-33261324IPR001471AP2/ERF domain
PfamPF008471.8E-14261310IPR001471AP2/ERF domain
PROSITE profilePS5103222.036261318IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASKDEHKEN EAVEEPSEIP RDEKSINPVG ESSVVLPRVV RIYMPDSDAT DSSSDEEEKL  60
QGEKSKRHER TCIKEIIIEN GKTRVICKKT SKEKKDIKLF QENAKKYKGV RQRRWGKWAA  120
EIRDTKNKTR LWLGTFDTAE EAALAYDKAA IEIRAMTSKE DLQVKEGVIE PSAIDVVEKS  180
SNQVGEISQV FPRLVRIHVP DHDTTDSSSD EEEKDEEGKS EGHERTCVKE IIIENGKTKV  240
ISKKKSKEKK DLNLMQEDVN KYRGVRRRKW GKWAAEIRDT RKKTRLWLGT FDTALEAALA  300
YDKAAIEIRG ANALTNILKP PAKKNNPIKI NFIVPPLKRQ KADP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-16105316158ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7547330.0KJ754733.1 Physalis philadelphica isolate P134 physalis organ size 1 (POS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362748.10.0PREDICTED: ethylene-responsive transcription factor 5-like
RefseqXP_006362749.10.0PREDICTED: ethylene-responsive transcription factor 5-like
RefseqXP_015158628.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ9SUE33e-28CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLM1C2N10.0M1C2N1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000584420.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-13ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]